Accompanying Datasets

Currently, these are largely Genetics of Gene Expression Studies (GWAS with expression in a tissue as a phenotype) but include those studies for which the biological phenotype is a readout in a cell line system (not in an organism).

This list is not exhaustive nor is Sage currently proposing to host these datasets. The types of datasets in the Sage Commons repository will evolve over time as community and partner needs change.

To add to or update this list please contact repdata@sagebase.org.

Dataset Name	Tumor/Tissue Type	Species	Disease	Approximate Number of Individuals	Investigator	Institution	Reference PMID Description
Human_Cancer_Lymphoblastoid _Cell_Lines_Broad	Lymphoblastoid_Cell_Lines	Human	Cancer	269	Altschuler	Broad	19043577
Mouse__Macrophage_Cleveland	Macrophage	Mouse		207	Smith	Cleveland	18197246
Human_Cancer_Lymphoblastoid _Cell_Lines_Chicago	Lymphoblastoid_Cell_Lines	Human	Cancer	176	Dolan	Chicago	17701890
Human_Cancer_Lymphoblastoid _Cell_Lines_Chicago	Lymphoblastoid_Cell_Lines	Human	Cancer	176	Dolan	Chicago	17537913
Human__Lymphoblastoid_Cell_Lines _Fibroblasts_Tcells_Sanger	Lymphoblastoid_Cell_Lines _Fibroblasts_Tcells	Human		75	Antonarakis	Sanger	19644074
Human__Lymphoblastoid_Cell_Lines _Geneva	Lymphoblastoid_Cell_Lines	Human		60	Montgomery	Geneva	20220756
Human__Lymphoblastoid_Cell_Lines _Chicago	Lymphoblastoid_Cell_Lines	Human		69	Pritchard	Chicago	20220758
Human__Lymphoblastoid_Cell_Lines _Upenn	Lymphoblastoid_Cell_Lines	Human		140	Cheung	Upenn	15269782
Human__Lymphoblastoid_Cell_Lines _Sanger	Lymphoblastoid_Cell_Lines	Human		210	Dermitzakis	Sanger	17289997
Human_Bone_Osteoblasts_McGill	Osteoblasts	Human	Bone	95	Pastinen	McGill	19654370
Human__Lymphoblastoid_Cell_Lines _McGill	Lymphoblastoid_Cell_Lines	Human		53	Pastinen	McGill	19838192
Human__Lymphoblastoid_Cell_Lines _Chicago	Lymphoblastoid_Cell_Lines	Human		176	Dolan	Chicago	18439551
Mouse__Liver_UCLA	Liver	Mouse		110	Lusis	UCLA	18688273
Human__Lymphoblastoid_Cell_Lines _Merck	Lymphoblastoid_Cell_Lines	Human		210	Schadt	Merck	15514893
Human_Cancer_Cancer_Cell_Lines _Harvard	Cancer_Cell_Lines	Human	Cancer	58	Sellers	Harvard	16001072
Human_Cancer_Cancer_Cell_Lines _NCI	Cancer_Cell_Lines	Human	Cancer	60	Weinstein	NCI	16648555
Human__Multiple_NIH	Multiple	Human		160	NIH	NIH	nihroadmap.nih.gov
Human__Cortex_Miami	Cortex	Human		193	Myers	Miami	17982457

View Sage Available and Transition Datasets